Bokeh prides itself on being a library for interactive data visualization.
Using a number of examples on a real-world dataset, the goal of this tutorial is to get you up and running with Bokeh.
You’ll learn how to:
- Transform your data into visualizations, using Bokeh
- Customize and organize your visualizations
- Add interactivity to your visualizations
So let’s jump in.
From Data to Visualization
Building a visualization with Bokeh involves the following steps:
- Prepare the data
- Determine where the visualization will be rendered
- Set up the figure(s)
- Connect to and draw your data
- Organize the layout
- Preview and save your beautiful data creation
Let’s explore each step in more detail.
Prepare the Data
Any good data visualization starts with-you guessed it-data. If you need a quick refresher on handling data in Python, definitely check out the growing number of excellent Real Python tutorials on the subject.
This step commonly involves data handling libraries like Pandas and Numpy and is all about taking the required steps to transform it into a form that is best suited for your intended visualization.
Determine Where the Visualization Will Be Rendered
At this step, you’ll determine how you want to generate and ultimately view your visualization. In this tutorial, you’ll learn about two common options that Bokeh provides: generating a static HTML file and rendering your visualization inline in a Jupyter Notebook.
Set up the Figure(s)
From here, you’ll assemble your figure, preparing the canvas for your visualization. In this step, you can customize everything from the titles to the tick marks. You can also set up a suite of tools that can enable various user interactions with your visualization.
Connect to and Draw Your Data
Next, you’ll use Bokeh’s multitude of renderers to give shape to your data. Here, you have the flexibility to draw your data from scratch using the many available marker and shape options, all of which are easily customizable. This functionality gives you incredible creative freedom in representing your data.
Additionally, Bokeh has some built-in functionality for building things like stacked bar charts and plenty of examples for creating more advanced visualizations like network graphs and maps.
Organize the Layout
If you need more than one figure to express your data, Bokeh’s got you covered. Not only does Bokeh offer the standard grid-like layout options, but it also allows you to easily organize your visualizations into a tabbed layout in just a few lines of code.
In addition, your plots can be quickly linked together, so a selection on one will be reflected on any combination of the others.
Preview and Save Your Beautiful Data Creation
Finally, it’s time to see what you created.
Whether you’re viewing your visualization in a browser or notebook, you’ll be able to explore your visualization, examine your customizations, and play with any interactions that were added.
If you like what you see, you can save your visualization to an image file. Otherwise, you can revisit the steps above as needed to bring your data vision to reality.
That’s it! Those six steps are the building blocks for a tidy, flexible template that can be used to take your data from the table to the big screen:
Some common code snippets that are found in each step are previewed above, and you’ll see how to fill out the rest as you move through the rest of the tutorial!
Generating Your First Figure
There are multiple ways to output your visualization in Bokeh. In this tutorial, you’ll see these two options:
output_file('filename.html')will write the visualization to a static HTML file.
output_notebook()will render your visualization directly in a Jupyter Notebook.
It’s important to note that neither function will actually show you the visualization. That doesn’t happen until
show() is called. However, they will ensure that, when
show() is called, the visualization appears where you intend it to.
This is a great opportunity to give you your first glimpse at a default Bokeh
As you can see, a new browser window opened with a tab called Empty Bokeh Figure and an empty figure. Not shown is the file generated with the name output_file_test.html in your current working directory.
If you were to run the same code snippet with
output_notebook() in place of
output_file(), assuming you have a Jupyter Notebook fired up and ready to go, you will get the following:
As you can see, the result is the same, just rendered in a different location.
More information about both
output_notebook() can be found in the Bokeh official docs.
Note: Sometimes, when rendering multiple visualizations sequentially, you’ll see that past renders are not being cleared with each execution. If you experience this, import and run the following between executions:
# Import reset_output (only needed once) from bokeh.plotting import reset_output # Use reset_output() between subsequent show() calls, as needed reset_output ()
Before moving on, you may have noticed that the default Bokeh figure comes pre-loaded with a toolbar. This is an important sneak preview into the interactive elements of Bokeh that come right out of the box. You’ll find out more about the toolbar and how to configure it in the Adding Interaction section at the end of this tutorial.
Getting Your Figure Ready for Data
Now that you know how to create and view a generic Bokeh figure either in a browser or Jupyter Notebook, it’s time to learn more about how to configure the
figure() object is not only the foundation of your data visualization but also the object that unlocks all of Bokeh’s available tools for visualizing data. The Bokeh figure is a subclass of the Bokeh Plot object, which provides many of the parameters that make it possible to configure the aesthetic elements of your figure.
To show you just a glimpse into the customization options available, let’s create the ugliest figure ever:
figure() object is instantiated, you can still configure it after the fact. Let’s say you want to get rid of the gridlines:
The gridline properties are accessible via the figure’s
grid attribute. In this case, setting
None effectively removes the gridlines altogether. More details about figure attributes can be found below the fold in the Plot class documentation.
Note: If you’re working in a notebook or IDE with auto-complete functionality, this feature can definitely be your friend! With so many customizable elements, it can be very helpful in discovering the available options:
Otherwise, doing a quick web search, with the keyword bokeh and what you are trying to do, will generally point you in the right direction.
There is tons more I could touch on here, but don’t feel like you’re missing out. I’ll make sure to introduce different figure tweaks as the tutorial progresses. Here are some other helpful links on the topic:
The Bokeh Plot Class is the superclass of the
figure()object, from which figures inherit a lot of their attributes.
The Figure Class documentation is a good place to find more detail about the arguments of the
Here are a few specific customization options worth checking out:
- Text Properties covers all the attributes related to changing font styles, sizes, colors, and so forth.
- TickFormatters are built-in objects specifically for formatting your axes using Python-like string formatting syntax.
Sometimes, it isn’t clear how your figure needs to be customized until it actually has some data visualized in it, so next you’ll learn how to make that happen.
Drawing Data With Glyphs
An empty figure isn’t all that exciting, so let’s look at glyphs: the building blocks of Bokeh visualizations. A glyph is a vectorized graphical shape or marker that is used to represent your data, like a circle or square. More examples can be found in the Bokeh gallery. After you create your figure, you are given access to a bevy of configurable glyph methods.
Let’s start with a very basic example, drawing some points on an x-y coordinate grid:
Once your figure is instantiated, you can see how it can be used to draw the x-y coordinate data using customized
Here are a few categories of glyphs:
Marker includes shapes like circles, diamonds, squares, and triangles and is effective for creating visualizations like scatter and bubble charts.
Line covers things like single, step, and multi-line shapes that can be used to build line charts.
Bar/Rectangle shapes can be used to create traditional or stacked bar (
hbar) and column (
vbar) charts as well as waterfall or gantt charts.
Information about the glyphs above, as well as others, can be found in Bokeh’s Reference Guide.
These glyphs can be combined as needed to fit your visualization needs. Let’s say I want to create a visualization that shows how many words I wrote per day to make this tutorial, with an overlaid trend line of the cumulative word count:
To combine the columns and lines on the figure, they are simply created using the same
You can check out much more info about styling legends. Teaser: they will show up again later in the tutorial when we start digging into interactive elements of the visualization.
A Quick Aside About Data
Anytime you are exploring a new visualization library, it’s a good idea to start with some data in a domain you are familiar with. The beauty of Bokeh is that nearly any idea you have should be possible. It’s just a matter of how you want to leverage the available tools to do so.
The remaining examples will use publicly available data from Kaggle, which has information about the National Basketball Association’s (NBA) 2017-18 season, specifically:
This data has nothing to do with what I do for work, but I love basketball and enjoy thinking about ways to visualize the ever-growing amount of data associated with it.
If you don’t have data to play with from school or work, think about something you’re interested in and try to find some data related to that. It will go a long way in making both the learning and the creative process faster and more enjoyable!
To follow along with the examples in the tutorial, you can download the datasets from the links above and read them into a Pandas
DataFrame using the following commands:
This code snippet reads the data from the three CSV files and automatically interprets the date columns as
It’s now time to get your hands on some real data.
The examples above used Python lists and Numpy arrays to represent the data, and Bokeh is well equipped to handle these datatypes. However, when it comes to data in Python, you are most likely going to come across Python dictionaries and Pandas DataFrames, especially if you’re reading in data from a file or external data source.
Bokeh is well equipped to work with these more complex data structures and even has built-in functionality to handle them, namely the
You may be asking yourself, “Why use a
ColumnDataSource when Bokeh can interface with other data types directly?”
For one, whether you reference a list, array, dictionary, or DataFrame directly, Bokeh is going to turn it into a
ColumnDataSource behind the scenes anyway. More importantly, the
ColumnDataSource makes it much easier to implement Bokeh’s interactive affordances.
ColumnDataSource is foundational in passing the data to the glyphs you are using to visualize. Its primary functionality is to map names to the columns of your data. This makes it easier for you to reference elements of your data when building your visualization. It also makes it easier for Bokeh to do the same when building your visualization.
ColumnDataSource can interpret three types of data objects:
dict: The keys are names associated with the respective value sequences (lists, arrays, and so forth).
DataFrame: The columns of the
DataFramebecome the reference names for the
groupby: The columns of the
ColumnDataSourcereference the columns as seen by calling
Let’s start by visualizing the race for first place in the NBA’s Western Conference in 2017-18 between the defending champion Golden State Warriors and the challenger Houston Rockets. The daily win-loss records of these two teams is stored in a DataFrame named
From here, you can load this
DataFrame into two
ColumnDataSource objects and visualize the race:
The visualization shows the tight race throughout the season, with the Warriors building a pretty big cushion around the middle of the season. However, a bit of a late-season slide allowed the Rockets to catch up and ultimately surpass the defending champs to finish the season as the Western Conference number-one seed.
Note: In Bokeh, you can specify colors either by name, hex value, or RGB color code.
For the visualization above, a color is being specified for the respective lines representing the two teams. Instead of using CSS color names like
'red' for the Rockets and
'blue' for the Warriors, you might have wanted to add a nice visual touch by using the official team colors in the form of hex color codes. Alternatively, you could have used tuples representing RGB color codes:
(206, 17, 65) for the Rockets,
(0, 107, 182) for the Warriors.
Bokeh provides a helpful list of CSS color names categorized by their general hue. Also, htmlcolorcodes.com is a great site for finding CSS, hex, and RGB color codes.
GroupFilterselects rows from a
ColumnDataSourcebased on a categorical reference value
ColumnDataSourcevia a list of integer indices
BooleanFilterallows you to use a list of
Truerows being selected
In the previous example, two
ColumnDataSource objects were created, one each from a subset of the
west_top_2 DataFrame. The next example will recreate the same output from one
ColumnDataSource based on all of
west_top_2 using a
GroupFilter that creates a view on the data:
For information about integrating data sources, check out the Bokeh user guide’s post on the
ColumnDataSource and other source objects available.
The Western Conference ended up being an exciting race, but say you want to see if the Eastern Conference was just as tight. Not only that, but you’d like to view them in a single visualization. This is a perfect segue to the next topic: layouts.
Organizing Multiple Visualizations With Layouts
The Eastern Conference standings came down to two rivals in the Atlantic Division: the Boston Celtics and the Toronto Raptors. Before replicating the steps used to create
west_top_2, let’s try to put the
ColumnDataSource to the test one more time using what you learned above.
In this example, you’ll see how to feed an entire DataFrame into a
ColumnDataSource and create views to isolate the relevant data:
ColumnDataSource was able to isolate the relevant data within a 5,040-by-39
DataFrame without breaking a sweat, saving a few lines of Pandas code in the process.
Looking at the visualization, you can see that the Eastern Conference race was no slouch. After the Celtics roared out of the gate, the Raptors clawed all the way back to overtake their division rival and finish the regular season with five more wins.
With our two visualizations ready, it’s time to put them together.
Similar to the functionality of Matplotlib’s
subplot, Bokeh offers the
gridplot functions in its
bokeh.layouts module. These functions can more generally be classified as layouts.
The usage is very straightforward. If you want to put two visualizations in a vertical configuration, you can do so with the following:
I’ll save you the two lines of code, but rest assured that swapping
row in the snippet above will similarly configure the two plots in a horizontal configuration.
Note: If you’re trying out the code snippets as you go through the tutorial, I want to take a quick detour to address an error you may see accessing
east_fig in the following examples. In doing so, you may receive an error like this:
WARNING:bokeh.core.validation.check:W-1004 (BOTH_CHILD_AND_ROOT): Models should not be a document root...
This is one of many errors that are part of Bokeh’s validation module, where
w-1004 in particular is warning about the re-use of
east_fig in a new layout.
To avoid this error as you test the examples, preface the code snippet illustrating each layout with the following:
Doing so will renew the relevant components to render the visualization, ensuring that no warning is needed.
One key difference of
gridplot is that it will automatically consolidate the toolbar across all of its children figures. The two visualizations above do not have a toolbar, but if they did, then each figure would have its own when using
row. With that, it also has its own
toolbar_location property, seen below set to
Syntactically, you’ll also notice below that
gridplot differs in that, instead of being passed a tuple as input, it requires a list of lists, where each sub-list represents a row in the grid:
gridplot allows the passing of
None values, which are interpreted as blank subplots. Therefore, if you wanted to leave a placeholder for two additional plots, then you could do something like this:
If you’d rather toggle between both visualizations at their full size without having to squash them down to fit next to or on top of each other, a good option is a tabbed layout.
Panel() takes as input a child, which can either be a single
figure() or a layout. (Remember that a layout is a general name for a
gridplot.) Once your panels are assembled, they can be passed as input to
Tabs() in a list.
Now that you understand how to access, draw, and organize your data, it’s time to move on to the real magic of Bokeh: interaction! As always, check out Bokeh’s User Guide for more information on layouts.
The feature that sets Bokeh apart is its ability to easily implement interactivity in your visualization. Bokeh even goes as far as describing itself as an interactive visualization library:
Bokeh is an interactive visualization library that targets modern web browsers for presentation. ( Source)
In this section, we’ll touch on five ways that you can add interactivity:
- Configuring the toolbar
- Selecting data points
- Adding hover actions
- Linking axes and selections
- Highlighting data using the legend
Implementing these interactive elements open up possibilities for exploring your data that static visualizations just can’t do by themselves.
Configuring the Toolbar
As you saw all the way back in Generating Your First Figure, the default Bokeh
figure() comes with a toolbar right out of the box. The default toolbar comes with the following tools (from left to right):
The toolbar can be removed by passing
toolbar_location=None when instantiating a
figure() object, or relocated by passing any of
Additionally, the toolbar can be configured to include any combination of tools you desire. Bokeh offers 18 specific tools across five categories:
To geek out on tools , make sure to visit Specifying Tools. Otherwise, they’ll be illustrated in covering the various interactions covered herein.
Selecting Data Points
Implementing selection behavior is as easy as adding a few specific keywords when declaring your glyphs.
The next example will create a scatter plot that relates a player’s total number of three-point shot attempts to the percentage made (for players with at least 100 three-point shot attempts).
The data can be aggregated from the
Here’s a sample of the resulting
Let’s say you want to select a groups of players in the distribution, and in doing so mute the color of the glyphs representing the non-selected players:
First, specify the selection tools you want to make available. In the example above,
'tap' (plus a reset button) were specified in a list called
select_tools. When the figure is instantiated, the toolbar is positioned
'below' the plot, and the list is passed to
tools to make the tools selected above available.
Each player is initially represented by a royal blue square glyph, but the following configurations are set for when a player or group of players is selected:
- Turn the selected player(s) to
- Change all non-selected players’ glyphs to a
That’s it! With just a few quick additions, the visualization now looks like this:
For even more information about what you can do upon selection, check out Selected and Unselected Glyphs.
Adding Hover Actions
So the ability to select specific player data points that seem of interest in my scatter plot is implemented, but what if you want to quickly see what individual players a glyph represents? One option is to use Bokeh’s
HoverTool() to show a tooltip when the cursor crosses paths with a glyph. All you need to do is append the following to the code snippet above:
HoverTool() is slightly different than the selection tools you saw above in that it has properties, specifically
Notice the addition of the Hover button to the toolbar, which can be toggled on and off.
If you want to even further emphasize the players on hover, Bokeh makes that possible with hover inspections. Here is a slightly modified version of the code snippet that added the tooltip:
Now you will see a small black circle appear over the original square when hovering over the various markers:
To further explore the capabilities of the
HoverTool(), see the HoverTool and Hover Inspections guides.
Linking is the process of syncing elements of different visualizations within a layout. For instance, maybe you want to link the axes of multiple plots to ensure that if you zoom in on one it is reflected on another. Let’s see how it is done.
For this example, the visualization will be able to pan to different segments of a team’s schedule and examine various game stats. Each stat will be represented by its own plot in a two-by-two
The data can be collected from the
team_stats DataFrame, selecting the Philadelphia 76ers as the team of interest:
Here are the results of the 76ers’ first 5 games:
Start by importing the necessary Bokeh libraries, specifying the output parameters, and reading the data into a
Each game is represented by a column, and will be colored green if the result was a win and red for a loss. To accomplish this, Bokeh’s
CategoricalColorMapper can be used to map the data values to specified colors:
For this use case, a list specifying the categorical data values to be mapped is passed to
factors and a list with the intended colors to
palette. For more on the
CategoricalColorMapper, see the Colors section of Handling Categorical Data on Bokeh’s User Guide.
There are four stats to visualize in the two-by-two
gridplot: points, assists, rebounds, and turnovers. In creating the four figures and configuring their respective charts, there is a lot of redundancy in the properties. So to streamline the code a
for loop can be used:
You can also see the implementation of the
CategoricalColorMapper in the configuration of the
vbar glyph. The
color property is passed a
dict with the field in the
ColumnDataSource to be mapped and the name of the
CategoricalColorMapper created above.
The initial view will only show the first 10 games of the 76ers’ season, so there needs to be a way to pan horizontally to navigate through the rest of the games in the season. Thus configuring the toolbar to have an
xpan tool allows panning throughout the plot without having to worry about accidentally skewing the view along the vertical axis.
Now that the figures are created,
gridplot can be setup by referencing the figures from the
dict created above:
Linking the axes of the four plots is as simple as setting the
x_range of each figure equal to one another:
Putting all the pieces together results in the following:
Similarly you can easily implement linked selections, where a selection on one plot will be reflected on others.
To see how this works, the next visualization will contain two scatter plots: one that shows the 76ers’ two-point versus three-point field goal percentage and the other showing the 76ers’ team points versus opponent points on a game-by-game basis.
The goal is to be able to select data points on the left-side scatter plot and quickly be able to recognize if the corresponding datapoint on the right scatter plot is a win or loss.
The DataFrame for this visualization is very similar to that from the first example:
Here’s what the data looks like:
The code to create the visualization is as follows:
Here’s how it looks in action, where you can see selections made on either figure will be reflected on the other:
By selecting a random sample of data points in the upper right quadrant of the left scatter plot, those corresponding to both high two-point and three-point field goal percentage, the data points on the right scatter plot are highlighted.
Similarly, selecting data points on the right scatter plot that correspond to losses tend to be further to the lower left, lower shooting percentages, on the left scatter plot.
All the details on linking plots can be found at Linking Plots in the Bokeh User Guide.
Highlighting Data Using the Legend
That brings us to the final interactivity example in this tutorial: interactive legends.
In the Drawing Data With Glyphs section, you saw how easy it is to implement a legend when creating your plot. With the legend in place, adding interactivity is merely a matter of assigning a
click_policy. Using a single line of code, you can quickly add the ability to either
mute data using the legend.
The first step is to configure the output and set up the data, creating a view for each player from the
Before creating the figures, the common parameters across the figure, markers, and data can be consolidated into dictionaries and reused. Not only does this save redundancy in the next step, but it provides an easy way to tweak these parameters later if need be:
Now that the various properties are set, the two scatter plots can be built in a much more concise fashion:
click_policy for each figure is set, and they are shown in a horizontal configuration:
For more on all things interaction in Bokeh, Adding Interactions in the Bokeh User Guide is a great place to start.
Summary and Next Steps
Congratulations! You’ve made it to the end of this tutorial.
You should now have a great set of tools to start turning your data into beautiful interactive visualizations using Bokeh.
You learned how to:
- Configure your script to render to either a static HTML file or Jupyter Notebook
- Instantiate and customize the
- Build your visualization using glyphs
- Access and filter your data with the
- Organize multiple plots in grid and tabbed layouts
- Add different forms of interaction, including selections, hover actions, linking, and interactive legends
To explore even more of what Bokeh is capable of, the official Bokeh User Guide is an excellent place to dig into some more advanced topics. I’d also recommend checking out Bokeh’s Gallery for tons of examples and inspiration.
Article by channel:
Everything you need to know about Digital Transformation
The best articles, news and events direct to your inbox
Read more articles tagged: Data Visualisation